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/data/users/matthijs/github_faiss/faiss/MetaIndexes.cpp
/**
* Copyright (c) 2015-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the BSD+Patents license found in the
* LICENSE file in the root directory of this source tree.
*/
// Copyright 2004-present Facebook. All Rights Reserved
// -*- c++ -*-
#include "MetaIndexes.h"
#include <pthread.h>
#include <cstdio>
#include "FaissAssert.h"
#include "Heap.h"
#include "AuxIndexStructures.h"
namespace faiss {
/*****************************************************
* IndexIDMap implementation
*******************************************************/
IndexIDMap::IndexIDMap (Index *index):
index (index),
own_fields (false)
{
FAISS_THROW_IF_NOT_MSG (index->ntotal == 0, "index must be empty on input");
is_trained = index->is_trained;
metric_type = index->metric_type;
verbose = index->verbose;
d = index->d;
}
void IndexIDMap::add (idx_t, const float *)
{
FAISS_THROW_MSG ("add does not make sense with IndexIDMap, "
"use add_with_ids");
}
void IndexIDMap::train (idx_t n, const float *x)
{
index->train (n, x);
is_trained = index->is_trained;
}
void IndexIDMap::reset ()
{
index->reset ();
ntotal = 0;
}
void IndexIDMap::add_with_ids (idx_t n, const float * x, const long *xids)
{
index->add (n, x);
for (idx_t i = 0; i < n; i++)
id_map.push_back (xids[i]);
ntotal = index->ntotal;
}
void IndexIDMap::search (idx_t n, const float *x, idx_t k,
float *distances, idx_t *labels) const
{
index->search (n, x, k, distances, labels);
idx_t *li = labels;
for (idx_t i = 0; i < n * k; i++) {
li[i] = li[i] < 0 ? li[i] : id_map[li[i]];
}
}
void IndexIDMap::range_search (idx_t n, const float *x, float radius,
RangeSearchResult *result) const
{
index->range_search(n, x, radius, result);
for (idx_t i = 0; i < result->lims[result->nq]; i++) {
result->labels[i] = result->labels[i] < 0 ?
result->labels[i] : id_map[result->labels[i]];
}
}
namespace {
struct IDTranslatedSelector: IDSelector {
const std::vector <long> & id_map;
const IDSelector & sel;
IDTranslatedSelector (const std::vector <long> & id_map,
const IDSelector & sel):
id_map (id_map), sel (sel)
{}
bool is_member(idx_t id) const override {
return sel.is_member(id_map[id]);
}
};
}
long IndexIDMap::remove_ids (const IDSelector & sel)
{
// remove in sub-index first
IDTranslatedSelector sel2 (id_map, sel);
long nremove = index->remove_ids (sel2);
long j = 0;
for (idx_t i = 0; i < ntotal; i++) {
if (sel.is_member (id_map[i])) {
// remove
} else {
id_map[j] = id_map[i];
j++;
}
}
FAISS_ASSERT (j == index->ntotal);
ntotal = j;
id_map.resize(ntotal);
return nremove;
}
IndexIDMap::~IndexIDMap ()
{
if (own_fields) delete index;
}
/*****************************************************
* IndexIDMap2 implementation
*******************************************************/
IndexIDMap2::IndexIDMap2 (Index *index): IndexIDMap (index)
{}
void IndexIDMap2::add_with_ids(idx_t n, const float* x, const long* xids)
{
size_t prev_ntotal = ntotal;
IndexIDMap::add_with_ids (n, x, xids);
for (size_t i = prev_ntotal; i < ntotal; i++) {
rev_map [id_map [i]] = i;
}
}
void IndexIDMap2::construct_rev_map ()
{
rev_map.clear ();
for (size_t i = 0; i < ntotal; i++) {
rev_map [id_map [i]] = i;
}
}
long IndexIDMap2::remove_ids(const IDSelector& sel)
{
// This is quite inefficient
long nremove = IndexIDMap::remove_ids (sel);
construct_rev_map ();
return nremove;
}
void IndexIDMap2::reconstruct (idx_t key, float * recons) const
{
try {
index->reconstruct (rev_map.at (key), recons);
} catch (const std::out_of_range& e) {
FAISS_THROW_FMT ("key %ld not found", key);
}
}
/*****************************************************
* IndexShards implementation
*******************************************************/
// subroutines
namespace {
typedef Index::idx_t idx_t;
template<class Job>
struct Thread {
Job job;
pthread_t thread;
Thread () {}
explicit Thread (const Job & job): job(job) {}
void start () {
pthread_create (&thread, nullptr, run, this);
}
void wait () {
pthread_join (thread, nullptr);
}
static void * run (void *arg) {
static_cast<Thread*> (arg)->job.run();
return nullptr;
}
};
/// callback + thread management to train 1 shard
struct TrainJob {
IndexShards *index; // the relevant index
int no; // shard number
idx_t n; // train points
const float *x;
void run ()
{
if (index->verbose)
printf ("begin train shard %d on %ld points\n", no, n);
index->shard_indexes [no]->train(n, x);
if (index->verbose)
printf ("end train shard %d\n", no);
}
};
struct AddJob {
IndexShards *index; // the relevant index
int no; // shard number
idx_t n;
const float *x;
const idx_t *ids;
void run ()
{
if (index->verbose)
printf ("begin add shard %d on %ld points\n", no, n);
if (ids)
index->shard_indexes[no]->add_with_ids (n, x, ids);
else
index->shard_indexes[no]->add (n, x);
if (index->verbose)
printf ("end add shard %d on %ld points\n", no, n);
}
};
/// callback + thread management to query in 1 shard
struct QueryJob {
const IndexShards *index; // the relevant index
int no; // shard number
// query params
idx_t n;
const float *x;
idx_t k;
float *distances;
idx_t *labels;
void run ()
{
if (index->verbose)
printf ("begin query shard %d on %ld points\n", no, n);
index->shard_indexes [no]->search (n, x, k,
distances, labels);
if (index->verbose)
printf ("end query shard %d\n", no);
}
};
// add translation to all valid labels
void translate_labels (long n, idx_t *labels, long translation)
{
if (translation == 0) return;
for (long i = 0; i < n; i++) {
if(labels[i] < 0) return;
labels[i] += translation;
}
}
/** merge result tables from several shards.
* @param all_distances size nshard * n * k
* @param all_labels idem
* @param translartions label translations to apply, size nshard
*/
template <class C>
void merge_tables (long n, long k, long nshard,
float *distances, idx_t *labels,
const float *all_distances,
idx_t *all_labels,
const long *translations)
{
if(k == 0) {
return;
}
long stride = n * k;
#pragma omp parallel
{
std::vector<int> buf (2 * nshard);
int * pointer = buf.data();
int * shard_ids = pointer + nshard;
std::vector<float> buf2 (nshard);
float * heap_vals = buf2.data();
#pragma omp for
for (long i = 0; i < n; i++) {
// the heap maps values to the shard where they are
// produced.
const float *D_in = all_distances + i * k;
const idx_t *I_in = all_labels + i * k;
int heap_size = 0;
for (long s = 0; s < nshard; s++) {
pointer[s] = 0;
if (I_in[stride * s] >= 0)
heap_push<C> (++heap_size, heap_vals, shard_ids,
D_in[stride * s], s);
}
float *D = distances + i * k;
idx_t *I = labels + i * k;
for (int j = 0; j < k; j++) {
if (heap_size == 0) {
I[j] = -1;
D[j] = C::neutral();
} else {
// pop best element
int s = shard_ids[0];
int & p = pointer[s];
D[j] = heap_vals[0];
I[j] = I_in[stride * s + p] + translations[s];
heap_pop<C> (heap_size--, heap_vals, shard_ids);
p++;
if (p < k && I_in[stride * s + p] >= 0)
heap_push<C> (++heap_size, heap_vals, shard_ids,
D_in[stride * s + p], s);
}
}
}
}
}
};
IndexShards::IndexShards (idx_t d, bool threaded, bool successive_ids):
Index (d), own_fields (false),
threaded (threaded), successive_ids (successive_ids)
{
}
void IndexShards::add_shard (Index *idx)
{
shard_indexes.push_back (idx);
sync_with_shard_indexes ();
}
void IndexShards::sync_with_shard_indexes ()
{
if (shard_indexes.empty()) return;
Index * index0 = shard_indexes[0];
d = index0->d;
metric_type = index0->metric_type;
is_trained = index0->is_trained;
ntotal = index0->ntotal;
for (int i = 1; i < shard_indexes.size(); i++) {
Index * index = shard_indexes[i];
FAISS_THROW_IF_NOT (metric_type == index->metric_type);
FAISS_THROW_IF_NOT (d == index->d);
ntotal += index->ntotal;
}
}
void IndexShards::train (idx_t n, const float *x)
{
// pre-alloc because we don't want reallocs
std::vector<Thread<TrainJob > > tss (shard_indexes.size());
int nt = 0;
for (int i = 0; i < shard_indexes.size(); i++) {
if(!shard_indexes[i]->is_trained) {
TrainJob ts = {this, i, n, x};
if (threaded) {
tss[nt] = Thread<TrainJob> (ts);
tss[nt++].start();
} else {
ts.run();
}
}
}
for (int i = 0; i < nt; i++) {
tss[i].wait();
}
sync_with_shard_indexes ();
}
void IndexShards::add (idx_t n, const float *x)
{
add_with_ids (n, x, nullptr);
}
void IndexShards::add_with_ids (idx_t n, const float * x, const long *xids)
{
FAISS_THROW_IF_NOT_MSG(!(successive_ids && xids),
"It makes no sense to pass in ids and "
"request them to be shifted");
if (successive_ids) {
FAISS_THROW_IF_NOT_MSG(!xids,
"It makes no sense to pass in ids and "
"request them to be shifted");
FAISS_THROW_IF_NOT_MSG(ntotal == 0,
"when adding to IndexShards with sucessive_ids, "
"only add() in a single pass is supported");
}
long nshard = shard_indexes.size();
const long *ids = xids;
ScopeDeleter<long> del;
if (!ids && !successive_ids) {
long *aids = new long[n];
for (long i = 0; i < n; i++)
aids[i] = ntotal + i;
ids = aids;
del.set (ids);
}
std::vector<Thread<AddJob > > asa (shard_indexes.size());
int nt = 0;
for (int i = 0; i < nshard; i++) {
long i0 = i * n / nshard;
long i1 = (i + 1) * n / nshard;
AddJob as = {this, i,
i1 - i0, x + i0 * d,
ids ? ids + i0 : nullptr};
if (threaded) {
asa[nt] = Thread<AddJob>(as);
asa[nt++].start();
} else {
as.run();
}
}
for (int i = 0; i < nt; i++) {
asa[i].wait();
}
ntotal += n;
}
void IndexShards::reset ()
{
for (int i = 0; i < shard_indexes.size(); i++) {
shard_indexes[i]->reset ();
}
sync_with_shard_indexes ();
}
void IndexShards::search (
idx_t n, const float *x, idx_t k,
float *distances, idx_t *labels) const
{
long nshard = shard_indexes.size();
float *all_distances = new float [nshard * k * n];
idx_t *all_labels = new idx_t [nshard * k * n];
ScopeDeleter<float> del (all_distances);
ScopeDeleter<idx_t> del2 (all_labels);
#if 1
// pre-alloc because we don't want reallocs
std::vector<Thread<QueryJob> > qss (nshard);
for (int i = 0; i < nshard; i++) {
QueryJob qs = {
this, i, n, x, k,
all_distances + i * k * n,
all_labels + i * k * n
};
if (threaded) {
qss[i] = Thread<QueryJob> (qs);
qss[i].start();
} else {
qs.run();
}
}
if (threaded) {
for (int i = 0; i < qss.size(); i++) {
qss[i].wait();
}
}
#else
// pre-alloc because we don't want reallocs
std::vector<QueryJob> qss (nshard);
for (int i = 0; i < nshard; i++) {
QueryJob qs = {
this, i, n, x, k,
all_distances + i * k * n,
all_labels + i * k * n
};
if (threaded) {
qss[i] = qs;
} else {
qs.run();
}
}
if (threaded) {
#pragma omp parallel for
for (int i = 0; i < qss.size(); i++) {
qss[i].run();
}
}
#endif
std::vector<long> translations (nshard, 0);
if (successive_ids) {
translations[0] = 0;
for (int s = 0; s + 1 < nshard; s++)
translations [s + 1] = translations [s] +
shard_indexes [s]->ntotal;
}
if (metric_type == METRIC_L2) {
merge_tables< CMin<float, int> > (
n, k, nshard, distances, labels,
all_distances, all_labels, translations.data ());
} else {
merge_tables< CMax<float, int> > (
n, k, nshard, distances, labels,
all_distances, all_labels, translations.data ());
}
}
IndexShards::~IndexShards ()
{
if (own_fields) {
for (int s = 0; s < shard_indexes.size(); s++)
delete shard_indexes [s];
}
}
/*****************************************************
* IndexSplitVectors implementation
*******************************************************/
IndexSplitVectors::IndexSplitVectors (idx_t d, bool threaded):
Index (d), own_fields (false),
threaded (threaded), sum_d (0)
{
}
void IndexSplitVectors::add_sub_index (Index *index)
{
sub_indexes.push_back (index);
sync_with_sub_indexes ();
}
void IndexSplitVectors::sync_with_sub_indexes ()
{
if (sub_indexes.empty()) return;
Index * index0 = sub_indexes[0];
sum_d = index0->d;
metric_type = index0->metric_type;
is_trained = index0->is_trained;
ntotal = index0->ntotal;
for (int i = 1; i < sub_indexes.size(); i++) {
Index * index = sub_indexes[i];
FAISS_THROW_IF_NOT (metric_type == index->metric_type);
FAISS_THROW_IF_NOT (ntotal == index->ntotal);
sum_d += index->d;
}
}
void IndexSplitVectors::add(idx_t /*n*/, const float* /*x*/) {
FAISS_THROW_MSG("not implemented");
}
namespace {
/// callback + thread management to query in 1 shard
struct SplitQueryJob {
const IndexSplitVectors *index; // the relevant index
int no; // shard number
// query params
idx_t n;
const float *x;
idx_t k;
float *distances;
idx_t *labels;
void run ()
{
if (index->verbose)
printf ("begin query shard %d on %ld points\n", no, n);
const Index * sub_index = index->sub_indexes[no];
long sub_d = sub_index->d, d = index->d;
idx_t ofs = 0;
for (int i = 0; i < no; i++) ofs += index->sub_indexes[i]->d;
float *sub_x = new float [sub_d * n];
ScopeDeleter<float> del (sub_x);
for (idx_t i = 0; i < n; i++)
memcpy (sub_x + i * sub_d, x + ofs + i * d, sub_d * sizeof (sub_x));
sub_index->search (n, sub_x, k, distances, labels);
if (index->verbose)
printf ("end query shard %d\n", no);
}
};
}
void IndexSplitVectors::search (
idx_t n, const float *x, idx_t k,
float *distances, idx_t *labels) const
{
FAISS_THROW_IF_NOT_MSG (k == 1,
"search implemented only for k=1");
FAISS_THROW_IF_NOT_MSG (sum_d == d,
"not enough indexes compared to # dimensions");
long nshard = sub_indexes.size();
float *all_distances = new float [nshard * k * n];
idx_t *all_labels = new idx_t [nshard * k * n];
ScopeDeleter<float> del (all_distances);
ScopeDeleter<idx_t> del2 (all_labels);
// pre-alloc because we don't want reallocs
std::vector<Thread<SplitQueryJob> > qss (nshard);
for (int i = 0; i < nshard; i++) {
SplitQueryJob qs = {
this, i, n, x, k,
i == 0 ? distances : all_distances + i * k * n,
i == 0 ? labels : all_labels + i * k * n
};
if (threaded) {
qss[i] = Thread<SplitQueryJob> (qs);
qss[i].start();
} else {
qs.run();
}
}
if (threaded) {
for (int i = 0; i < qss.size(); i++) {
qss[i].wait();
}
}
long factor = 1;
for (int i = 0; i < nshard; i++) {
if (i > 0) { // results of 0 are already in the table
const float *distances_i = all_distances + i * k * n;
const idx_t *labels_i = all_labels + i * k * n;
for (long j = 0; j < n; j++) {
if (labels[j] >= 0 && labels_i[j] >= 0) {
labels[j] += labels_i[j] * factor;
distances[j] += distances_i[j];
} else {
labels[j] = -1;
distances[j] = 0.0 / 0.0;
}
}
}
factor *= sub_indexes[i]->ntotal;
}
}
void IndexSplitVectors::train(idx_t /*n*/, const float* /*x*/) {
FAISS_THROW_MSG("not implemented");
}
void IndexSplitVectors::reset ()
{
FAISS_THROW_MSG ("not implemented");
}
IndexSplitVectors::~IndexSplitVectors ()
{
if (own_fields) {
for (int s = 0; s < sub_indexes.size(); s++)
delete sub_indexes [s];
}
}
}; // namespace faiss
faiss::IndexShards::train
void train(idx_t n, const float *x) override
Definition: MetaIndexes.cpp:397
faiss::RangeSearchResult::nq
size_t nq
nb of queries
Definition: AuxIndexStructures.h:30
faiss::IndexShards::IndexShards
IndexShards(idx_t d, bool threaded=false, bool successive_ids=true)
Definition: MetaIndexes.cpp:367
faiss::Index::reset
virtual void reset()=0
removes all elements from the database.
faiss::IndexIDMap::search
void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const override
Definition: MetaIndexes.cpp:69
faiss::IndexShards::add_with_ids
void add_with_ids(idx_t n, const float *x, const long *xids) override
Definition: MetaIndexes.cpp:426
faiss::IDSelector
Definition: AuxIndexStructures.h:52
faiss::IndexShards::search
void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const override
Definition: MetaIndexes.cpp:487
faiss::IndexIDMap2::add_with_ids
void add_with_ids(idx_t n, const float *x, const long *xids) override
Definition: MetaIndexes.cpp:142
faiss::Index::train
virtual void train(idx_t n, const float *x)
Definition: Index.cpp:23
faiss::ScopeDeleter
Definition: FaissException.h:39
faiss::IndexSplitVectors::reset
void reset() override
removes all elements from the database.
Definition: MetaIndexes.cpp:716
faiss::IndexIDMap::add
void add(idx_t n, const float *x) override
this will fail. Use add_with_ids
Definition: MetaIndexes.cpp:40
faiss::IndexSplitVectors
Definition: MetaIndexes.h:145
faiss::Index::d
int d
vector dimension
Definition: Index.h:64
faiss::IndexIDMap::id_map
std::vector< long > id_map
! whether pointers are deleted in destructo
Definition: MetaIndexes.h:29
faiss::IndexIDMap::range_search
void range_search(idx_t n, const float *x, float radius, RangeSearchResult *result) const override
Definition: MetaIndexes.cpp:80
faiss::Index::add
virtual void add(idx_t n, const float *x)=0
faiss::IndexSplitVectors::train
void train(idx_t n, const float *x) override
Definition: MetaIndexes.cpp:712
faiss::IndexShards::add
void add(idx_t n, const float *x) override
supported only for sub-indices that implement add_with_ids
Definition: MetaIndexes.cpp:420
faiss::Index::idx_t
long idx_t
all indices are this type
Definition: Index.h:62
faiss::Index::ntotal
idx_t ntotal
total nb of indexed vectors
Definition: Index.h:65
faiss::IndexIDMap2::construct_rev_map
void construct_rev_map()
make the rev_map from scratch
Definition: MetaIndexes.cpp:151
faiss::Index::verbose
bool verbose
verbosity level
Definition: Index.h:66
faiss::IndexSplitVectors::add
void add(idx_t n, const float *x) override
Definition: MetaIndexes.cpp:611
faiss::Index::remove_ids
virtual long remove_ids(const IDSelector &sel)
Definition: Index.cpp:48
faiss::IndexIDMap2::remove_ids
long remove_ids(const IDSelector &sel) override
remove ids adapted to IndexFlat
Definition: MetaIndexes.cpp:160
faiss::IndexShards::threaded
bool threaded
should the sub-indexes be deleted along with this?
Definition: MetaIndexes.h:90
faiss::Index::search
virtual void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const =0
faiss::IndexShards::reset
void reset() override
removes all elements from the database.
Definition: MetaIndexes.cpp:479
faiss::RangeSearchResult
Definition: AuxIndexStructures.h:29
faiss::IndexIDMap::reset
void reset() override
removes all elements from the database.
Definition: MetaIndexes.cpp:53
faiss::IndexSplitVectors::search
void search(idx_t n, const float *x, idx_t k, float *distances, idx_t *labels) const override
Definition: MetaIndexes.cpp:655
faiss::IndexIDMap::remove_ids
long remove_ids(const IDSelector &sel) override
remove ids adapted to IndexFlat
Definition: MetaIndexes.cpp:106
faiss::Index::metric_type
MetricType metric_type
type of metric this index uses for search
Definition: Index.h:72
faiss::IndexIDMap2::reconstruct
void reconstruct(idx_t key, float *recons) const override
Definition: MetaIndexes.cpp:168
faiss::IndexIDMap::train
void train(idx_t n, const float *x) override
Definition: MetaIndexes.cpp:47
faiss::Index
Definition: Index.h:60
faiss::RangeSearchResult::lims
size_t * lims
size (nq + 1)
Definition: AuxIndexStructures.h:31
faiss::Index::range_search
virtual void range_search(idx_t n, const float *x, float radius, RangeSearchResult *result) const
Definition: Index.cpp:28
faiss::Index::is_trained
bool is_trained
set if the Index does not require training, or if training is done already
Definition: Index.h:69
faiss::Index::reconstruct
virtual void reconstruct(idx_t key, float *recons) const
Definition: Index.cpp:54
faiss::IndexIDMap::add_with_ids
void add_with_ids(idx_t n, const float *x, const long *xids) override
Definition: MetaIndexes.cpp:60
faiss::RangeSearchResult::labels
idx_t * labels
result for query i is labels[lims[i]:lims[i+1]]
Definition: AuxIndexStructures.h:35
faiss::IndexSplitVectors::IndexSplitVectors
IndexSplitVectors(idx_t d, bool threaded=false)
sum of dimensions seen so far
Definition: MetaIndexes.cpp:581
faiss::IndexIDMap::own_fields
bool own_fields
! the sub-index
Definition: MetaIndexes.h:28